The scent of pumpkin spice wafting through your kitchen, a golden swirl of sweet cream cheese melting into every bite… these keto pumpkin cream cheese swirl muffins are the kind of cozy crave worthy treat that makes fall mornings magical. And guess what? They’re sugar free, gluten free, and ridiculously easy
Table of Contents
Why You’ll Love These Muffins

These muffins aren’t just low carb. They’re pure comfort in a cupcake liner. You get that dreamy mix of spiced pumpkin goodness with a tangy creamy swirl that feels way too indulgent to be keto. But surprise. Each one has only about 5g net carbs
They’re
• Perfect for chilly mornings or after school snacks
• Soft and fluffy thanks to almond flour
• Sweetened just right with keto friendly erythritol
• Great for batch freezing and reheating
• Totally kid approved and adult hoarded
If you’re loving these muffins you’ll go crazy for this rich and creamy pumpkin spice coffee creamer too. It’s a fall dream team
Ingredients You’ll Need

For the pumpkin muffin batter
• 1 cup almond flour (blanched not almond meal)
• ½ tsp baking soda
• ½ tsp baking powder
• ½ tsp cinnamon
• ¼ tsp nutmeg
• Pinch of salt
• 2 large eggs
• ⅓ cup pumpkin puree (not pie filling)
• ¼ cup granulated erythritol
• 1 tsp vanilla extract
For the cream cheese swirl
• 4 oz cream cheese (softened)
• 1 tbsp powdered erythritol
• ½ tsp vanilla extract
Craving more fall coziness? Try these pumpkin cream cheese muffins too. They’re an absolute must bake
How to Make Keto Pumpkin Cream Cheese Swirl Muffins

Step 1 Make the pumpkin batter
In a large bowl whisk the almond flour baking soda baking powder cinnamon nutmeg and salt. In a separate bowl beat the eggs pumpkin erythritol and vanilla. Pour the wet ingredients into the dry and mix until just combined
Step 2 Prepare the cream cheese swirl
In a small bowl beat the cream cheese powdered erythritol and vanilla until smooth. This creamy swirl is what makes these muffins sing
Step 3 Fill swirl and bake
Spoon the pumpkin batter into lined muffin tins filling each about three quarters full. Add a small dollop of cream cheese mixture on top and use a toothpick or knife to gently swirl it in
Step 4 Let them cool and enjoy
Bake at 350°F for 18 to 22 minutes or until a toothpick comes out clean. Let them cool before removing from the tin or just eat one warm if you can’t wait

Pro Tips for Perfect Muffins
• Don’t overmix. Stir just until combined for fluffiest texture
• Use blanched almond flour. It’s finer and creates a smoother crumb
• Chill your swirl. If your cream cheese is too warm it won’t swirl well
• Swirl smart. Use a skewer or chopstick for pretty ribbons

Pair your muffins with a warm mug of this mulled cider in a crockpot for the ultimate autumn treat
Storage and Freezer Instructions
These muffins store like champs. Keep them in an airtight container in the fridge for up to five days
To freeze wrap each muffin individually in plastic wrap and place in a freezer safe bag. To reheat microwave for twenty to thirty seconds or pop into a warm oven for five to seven minutes
Nutrition Info Per Muffin
Nutrient | Amount |
---|---|
Calories | 140 |
Net Carbs | 5g |
Fat | 11g |
Protein | 4g |
More Keto Fall Recipes You’ll Love
Looking for more cozy bakes that fit your goals? Check out
• Pumpkin Cream Cheese Muffins
• Pumpkin Spice Coffee Creamer
• Mulled Cider in a Crockpot
FAQ
Q Can I use coconut flour instead of almond flour
Coconut flour absorbs more liquid and isn’t a one to one swap. Stick to almond flour for best texture here
Q How long do they stay fresh
Stored in the fridge they stay moist and yummy for up to five days. You can freeze them too
Q Can I make these dairy free
Sure. Use a dairy free cream cheese alternative but keep in mind it may not swirl quite the same
Go ahead and bake a batch. Taste that fall magic. Let me know how they turned out in the comments or snap a pic and tag us
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Print
Keto Pumpkin Cream Cheese Swirl Muffins (Fluffy Low Carb Fall Favorite)
- Total Time: 37 minutes
- Yield: 9 muffins 1x
Description
These keto pumpkin cream cheese swirl muffins are soft, spiced, and swirled with creamy goodness. Perfect for cozy mornings or a quick snack with only 5g net carbs.
Ingredients
1 cup almond flour (blanched not almond meal)
½ tsp baking soda
½ tsp baking powder
½ tsp cinnamon
¼ tsp nutmeg
Pinch of salt
2 large eggs
⅓ cup pumpkin puree (not pie filling)
¼ cup granulated erythritol
1 tsp vanilla extract
4 oz cream cheese (softened)
1 tbsp powdered erythritol
½ tsp vanilla extract
Instructions
1. Preheat oven to 350°F and line 9 muffin tin cups with paper liners
2. In a large bowl whisk almond flour baking soda baking powder cinnamon nutmeg and salt
3. In another bowl whisk eggs pumpkin erythritol and vanilla then combine with the dry ingredients
4. In a separate bowl beat cream cheese powdered erythritol and vanilla until smooth
5. Fill muffin liners three quarters full with batter
6. Add a small dollop of cream cheese mixture on top of each and swirl gently with a toothpick
7. Bake for 18 to 22 minutes until a toothpick comes out clean
8. Cool before serving or store airtight in fridge
Notes
For a smoother texture always use blanched almond flour not almond meal
You can freeze them individually for up to 3 months
Add a pinch of ground cloves if using apple pie spice instead of pumpkin pie spice
- Prep Time: 15 minutes
- Cook Time: 22 minutes
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 140
- Fat: 11
- Carbohydrates: 5
- Protein: 4